Index _ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W _ __call__() (ComputeFn method) (ComputeWeightsFn method) (DimeNetPP method) (EmbeddingBlock method) (EnergyFn method) (EnergyFnTemplate method) (ErrorFn method) (InteractionBlock method) (OutputBlock method) (PairwiseNN method) (PropagateFn method) (PropertyPredictor method) (QuantityComputeFunction method) (RadialBesselLayer method) (ResidualLayer method) (SinglePropertyPredictor static method) (SmoothingEnvelope method) (SphericalBesselLayer method) (TrajFn method) __init__() (DataParallelTrainer method) (Difftre method) (DifftreParallel method) (DimeNetPP method) (EarlyStopping method) (EmbeddingBlock method) (EnsembleOfModels method) (ForceMatching method) (InteractionBlock method) (InterleaveTrainers method) (MLETrainerTemplate method) (OrthogonalVarianceScalingInit method) (OutputBlock method) (PairwiseNN method) (PropertyPrediction method) (RadialBesselLayer method) (RBFFrequencyInitializer method) (RelativeEntropy method) (ResidualLayer method) (SGMCForceMatching method) (SimpleState method) (SimulatorState method) (SmoothingEnvelope method) (SphericalBesselLayer method) (State method) (TimingClass method) (TrajectoryState method) A add_statepoint() (Difftre method) (RelativeEntropy method) add_task() (DataParallelTrainer method) (Difftre method) (DifftreParallel method) (ForceMatching method) (MLETrainerTemplate method) (PropertyPrediction method) (RelativeEntropy method) add_trainer() (InterleaveTrainers method) ADFParams() (in module jax_md_mod.custom_quantity) allocate_neighborlist() (in module chemtrain.data.preprocessing) angle() (in module jax_md_mod.model.sparse_graph) angle_triplets() (in module jax_md_mod.model.sparse_graph) angular_displacement() (in module jax_md_mod.custom_quantity) ApplyFn (class in chemtrain.compose.utils) associated_legendre_polynomials() (in module jax_md_mod.model.dimenet_basis_util) AtomisticDataset() (in module chemtrain.learn.force_matching) aux (TrajectoryState attribute) B bar (Pressure property) barostat_press (TrajectoryState attribute) batch_apply_fn() (in module chemtrain.compose.utils) bessel_basis() (in module jax_md_mod.model.dimenet_basis_util) best_inference_params (DataParallelTrainer attribute) (ForceMatching attribute) (PropertyPrediction attribute) best_inference_params_replicated (DataParallelTrainer attribute) (ForceMatching attribute) (PropertyPrediction attribute) best_params (DataParallelTrainer attribute) (Difftre attribute) (DifftreParallel attribute) (ForceMatching attribute) (PropertyPrediction attribute) BondAngleParams() (in module jax_md_mod.custom_quantity) BondDihedralParams() (in module jax_md_mod.custom_quantity) build_dataset() (in module chemtrain.learn.force_matching) (in module chemtrain.learn.property_prediction) C canonicalize_state_kwargs() (in module chemtrain.ensemble.sampling) cap_exactly() (SparseDirectionalGraph method) charge_eq_energy_neighborlist() (in module jax_md_mod.custom_electrostatics) checkpoint() (DataParallelTrainer method) (Difftre method) (DifftreParallel method) (EnsembleOfModels method) (ForceMatching method) (InterleaveTrainers method) (MLETrainerTemplate method) (PropertyPrediction method) (RelativeEntropy method) (SGMCForceMatching method) checkpoint_quantities() (in module chemtrain.ensemble.reweighting) chemtrain.data.preprocessing module chemtrain.deploy.exporter module chemtrain.deploy.graphs module chemtrain.ensemble.evaluation module chemtrain.ensemble.reweighting module chemtrain.ensemble.sampling module chemtrain.learn.difftre module chemtrain.learn.force_matching module chemtrain.learn.max_likelihood module chemtrain.learn.probabilistic module chemtrain.learn.property_prediction module chemtrain.quantity.constants module chemtrain.quantity.observables module chemtrain.quantity.property_prediction module chemtrain.trainers module chemtrain.typing module compute_cell_list() (in module chemtrain.deploy.graphs) ComputeFn (class in chemtrain.typing) ComputeWeightsFn (class in chemtrain.ensemble.reweighting) concatenate() (Topology class method) constrain_ff_params() (in module jax_md_mod.model.prior) convert_dataset_to_graphs() (in module jax_md_mod.model.sparse_graph) core_interaction() (in module jax_md_mod.custom_electrostatics) count() (SimpleState method) create_from_args() (SimpleDenseNeighborList static method) (SimpleSparseNeighborList static method) custom_coulomb_recip_ewald() (in module jax_md_mod.custom_electrostatics) custom_coulomb_recip_pme() (in module jax_md_mod.custom_electrostatics) customn_lennard_jones_neighbor_list() (in module jax_md_mod.custom_energy) D DataParallelTrainer (class in chemtrain.trainers.base) Density (class in chemtrain.quantity.constants) density (Density property) density() (in module jax_md_mod.custom_quantity) Difftre (class in chemtrain.trainers) DifftreParallel (class in chemtrain.trainers) dihedral_displacement() (in module jax_md_mod.custom_quantity) dihedral_energy() (in module jax_md_mod.custom_energy) DimeNetPP (class in jax_md_mod.model.neural_networks) dimenetpp_neighborlist() (in module jax_md_mod.model.neural_networks) dimenetpp_property_prediction() (in module jax_md_mod.model.neural_networks) dropout_uq_predictions() (in module chemtrain.learn.probabilistic) dynamic_kwargs (TrajectoryState attribute) dynamic_statepoint() (in module chemtrain.quantity.observables) E early_stopping() (EarlyStopping method) EarlyStopping (class in chemtrain.trainers.base) EmbeddingBlock (class in jax_md_mod.model.layers) energy_fn (DataParallelTrainer attribute) (Difftre attribute) (DifftreParallel attribute) (EnsembleOfModels attribute) (ForceMatching attribute) (InterleaveTrainers attribute) (MLETrainerTemplate attribute) (PropertyPrediction attribute) (RelativeEntropy attribute) (SGMCForceMatching attribute) energy_fn() (Exporter method) energy_params (TrajectoryState attribute) energy_under_strain() (in module jax_md_mod.custom_quantity) energy_wrapper() (in module jax_md_mod.custom_quantity) EnergyFn (class in chemtrain.typing) EnergyFnTemplate (class in chemtrain.typing) EnsembleOfModels (class in chemtrain.trainers) entropy_diff (TrajectoryState attribute) ErrorFn (class in chemtrain.typing) estimate_bond_constants() (in module jax_md_mod.custom_quantity) evaluate() (DataParallelTrainer method) (ForceMatching method) (PropertyPrediction method) evaluate_mae_testset() (ForceMatching method) evaluate_testset_error() (PropertyPrediction method) exclude_from_neighbor_list() (in module jax_md_mod.custom_partition) export() (Exporter method) Exporter (class in chemtrain.deploy.exporter) F flatten_graph() (in module chemtrain.compose.utils) ForceField (class in jax_md_mod.model.prior) ForceMatching (class in chemtrain.trainers) free_energy_diff (TrajectoryState attribute) from_dict() (SparseDirectionalGraph class method) from_mdtraj() (Topology class method) from_tuple() (SimulatorState method) (TimingClass method) (TrajectoryState method) G g_per_cm3 (Density property) generic_repulsion() (in module jax_md_mod.custom_energy) generic_repulsion_neighborlist() (in module jax_md_mod.custom_energy) generic_repulsion_nonbond() (in module jax_md_mod.custom_energy) generic_repulsion_pair() (in module jax_md_mod.custom_energy) get() (SimulatorState method) (TimingClass method) (TrajectoryState method) get_angle_params() (ForceField method) get_angles() (Topology method) get_atom_species() (Topology method) get_bond_params() (ForceField method) get_bonds() (Topology method) get_data() (ForceField method) get_dataset() (in module chemtrain.data.preprocessing) get_dihedral_params() (ForceField method) get_dihedrals() (Topology method) get_nonbonded_params() (ForceField method) get_padded_topology() (Topology method) get_sim_state() (Difftre method) (RelativeEntropy method) get_triplet_indices() (in module jax_md_mod.custom_partition) graph_type (Exporter attribute) H harmonic_angle() (in module jax_md_mod.custom_energy) high_precision_segment_sum() (in module jax_md_mod.model.layers) I index() (SimpleState method) init_adf_nbrs() (in module jax_md_mod.custom_quantity) init_angle_potential() (in module jax_md_mod.model.prior) init_angular_distribution_target() (in module chemtrain.quantity.targets) init_bar() (in module chemtrain.ensemble.reweighting) init_batch_functions() (in module chemtrain.data.data_loaders) init_bond_angle_distribution() (in module jax_md_mod.custom_quantity) init_bond_dihedral_distribution() (in module jax_md_mod.custom_quantity) init_bond_length() (in module jax_md_mod.custom_quantity) init_bond_potential() (in module jax_md_mod.model.prior) init_born_stiffness_tensor() (in module chemtrain.quantity.observables) init_dataloaders() (in module chemtrain.data.data_loaders) init_default_loss_fn() (in module chemtrain.learn.difftre) init_difftre_gradient_and_propagation() (in module chemtrain.learn.difftre) init_dihedral_distribution_target() (in module chemtrain.quantity.targets) init_dihedral_potential() (in module jax_md_mod.model.prior) init_dipole_moment() (in module chemtrain.quantity.property_prediction) init_dropout_uq_fwd() (in module chemtrain.learn.probabilistic) init_elementwise_prior_fn() (in module chemtrain.learn.probabilistic) init_feature_pre_computation() (in module chemtrain.quantity.property_prediction) init_force_matching() (in module chemtrain.learn.probabilistic) init_fractional_coordinates() (in module jax_md_mod.custom_space) init_heat_capacity_npt() (in module chemtrain.quantity.observables) init_heat_capacity_nvt() (in module chemtrain.quantity.observables) init_identity_fn() (in module chemtrain.quantity.observables) init_likelihood() (in module chemtrain.learn.probabilistic) init_linear_traj_mean_fn() (in module chemtrain.quantity.observables) init_local_structure_index() (in module jax_md_mod.custom_quantity) init_log_posterior_fn() (in module chemtrain.learn.probabilistic) init_loss_fn() (in module chemtrain.learn.force_matching) (in module chemtrain.learn.property_prediction) init_model() (in module chemtrain.learn.force_matching) (in module chemtrain.learn.property_prediction) init_nonbonded_potential() (in module jax_md_mod.model.prior) init_pot_reweight_propagation_fns() (in module chemtrain.ensemble.reweighting) init_pressure() (in module jax_md_mod.custom_quantity) init_prior_potential() (in module jax_md_mod.model.prior) init_radial_distribution_target() (in module chemtrain.quantity.targets) init_rdf() (in module jax_md_mod.custom_quantity) init_reference_trajectory_reweight_fns() (in module chemtrain.ensemble.reweighting) init_rel_entropy_gradient_and_propagation() (in module chemtrain.learn.difftre) init_rel_entropy_loss_fn() (in module chemtrain.learn.difftre) init_relative_entropy_target() (in module chemtrain.quantity.targets) init_relative_entropy_traj_fn() (in module chemtrain.quantity.observables) init_rmsd() (in module jax_md_mod.custom_quantity) init_sigma_born() (in module jax_md_mod.custom_quantity) init_simulation_fn() (in module chemtrain.ensemble.sampling) init_step_size_adaption() (Difftre method) (in module chemtrain.learn.difftre) (RelativeEntropy method) init_stiffness_tensor_stress_fluctuation() (in module jax_md_mod.custom_quantity) init_tcf_nbrs() (in module jax_md_mod.custom_quantity) init_tetrahedral_order_parameter() (in module jax_md_mod.custom_quantity) init_traj_mean_fn() (in module chemtrain.quantity.observables) init_val_loss_fn() (in module chemtrain.learn.max_likelihood) init_val_predictions() (in module chemtrain.learn.max_likelihood) init_velocity_autocorrelation() (in module jax_md_mod.custom_quantity) init_virial_stress_tensor() (in module jax_md_mod.custom_quantity) InitArguments (class in chemtrain.quantity.targets) initialize_simulator_template() (in module chemtrain.ensemble.sampling) InteractionBlock (class in jax_md_mod.model.layers) InterleaveTrainers (class in chemtrain.trainers) items() (SimulatorState method) (SparseDirectionalGraph method) (TimingClass method) (TrajectoryState method) J jax_md_mod.custom_interpolate module jax_md_mod.custom_partition module jax_md_mod.custom_quantity module jax_md_mod.custom_space module jax_md_mod.model.dimenet_basis_util module jax_md_mod.model.layers module jax_md_mod.model.neural_networks module jax_md_mod.model.prior module jax_md_mod.model.sparse_graph module jcn::AtomBuilder (C++ class) jcn::AtomBuilder::AtomBuilder (C++ function) jcn::AtomBuilder::build_domain (C++ function) jcn::AtomBuilder::evaluate_domain (C++ function) jcn::AtomShapes (C++ struct) jcn::AtomShapes::n_atoms (C++ member) jcn::AtomShapes::reallocate (C++ member) jcn::Connector (C++ class) jcn::Connector::compute_force (C++ function) jcn::Connector::Impl (C++ class) jcn::Connector::initialize (C++ function) jcn::Connector::load_model (C++ function) jcn::ConnectorConfig (C++ struct) jcn::ConnectorConfig::backend (C++ member) jcn::ConnectorConfig::device (C++ member) jcn::ConnectorConfig::memory_fraction (C++ member) jcn::DeviceSparseNeighborList (C++ class) jcn::DeviceSparseNeighborList::build_graph (C++ function) jcn::DeviceSparseNeighborList::evaluate_statistics (C++ function) jcn::DeviceSparseNeighborList::get_neighbor_list_shapes (C++ function) jcn::DeviceSparseNeighborList::initialize (C++ function) jcn::GraphBuilder (C++ class) jcn::ModelProperties (C++ struct) jcn::ModelProperties::comm_dist (C++ member) jcn::ModelProperties::cutoff (C++ member) jcn::ModelProperties::neighbor_list (C++ member) jcn::ModelProperties::unit_style (C++ member) jcn::NeighborListShapes (C++ struct) jcn::NeighborListShapes::graph_shapes (C++ member) jcn::NeighborListShapes::graph_types (C++ member) jcn::NeighborListShapes::reallocate (C++ member) jcn::Results (C++ struct) jcn::Results::potential (C++ member) jcn::Results::stats (C++ member) jcn::SimpleDenseNeighborList (C++ class) jcn::SimpleDenseNeighborList::build_graph (C++ function) jcn::SimpleDenseNeighborList::get_neighbor_list_shapes (C++ function) jcn::SimpleDenseNeighborList::initialize (C++ function) jcn::SimpleSparseNeighborList (C++ class) jcn::SimpleSparseNeighborList::build_graph (C++ function) jcn::SimpleSparseNeighborList::get_neighbor_list_shapes (C++ function) jcn::SimpleSparseNeighborList::initialize (C++ function) jcn::Statistics (C++ struct) jcn::Statistics::flops (C++ member) jcn::Statistics::recompiled (C++ member) Jn() (in module jax_md_mod.model.dimenet_basis_util) Jn_zeros() (in module jax_md_mod.model.dimenet_basis_util) K kelvin (Temperature property) key (TrajectoryState attribute) keys() (SimulatorState method) (SparseDirectionalGraph method) (TimingClass method) (TrajectoryState method) kinetic_energy_tensor() (in module jax_md_mod.custom_quantity) kinetic_energy_wrapper() (in module jax_md_mod.custom_quantity) L lennard_jones_nonbond() (in module jax_md_mod.custom_energy) limit_batches_per_epoch() (DataParallelTrainer method) (ForceMatching method) (PropertyPrediction method) list_of_params (EnsembleOfModels attribute) (SGMCForceMatching attribute) ListStatistics (in module chemtrain.deploy.graphs) load_box() (in module jax_md_mod.io) load_energy_params() (DataParallelTrainer method) (Difftre method) (DifftreParallel method) (EnsembleOfModels method) (ForceMatching method) (InterleaveTrainers method) (MLETrainerTemplate method) (PropertyPrediction method) (RelativeEntropy method) (SGMCForceMatching method) load_ff() (ForceField class method) lorentz_berthelot() (in module jax_md_mod.custom_energy) M mae_loss() (in module chemtrain.learn.max_likelihood) map_dataset() (in module chemtrain.data.preprocessing) mapping() (ForceField method) mask_neighbor_list() (in module jax_md_mod.custom_partition) masked_neighbor_list() (in module jax_md_mod.custom_partition) max_species (ForceField property) mcmc_statistics() (in module chemtrain.learn.probabilistic) MLETrainerTemplate (class in chemtrain.trainers.base) module chemtrain.data.preprocessing chemtrain.deploy.exporter chemtrain.deploy.graphs chemtrain.ensemble.evaluation chemtrain.ensemble.reweighting chemtrain.ensemble.sampling chemtrain.learn.difftre chemtrain.learn.force_matching chemtrain.learn.max_likelihood chemtrain.learn.probabilistic chemtrain.learn.property_prediction chemtrain.quantity.constants chemtrain.quantity.observables chemtrain.quantity.property_prediction chemtrain.trainers chemtrain.typing jax_md_mod.custom_interpolate jax_md_mod.custom_partition jax_md_mod.custom_quantity jax_md_mod.custom_space jax_md_mod.model.dimenet_basis_util jax_md_mod.model.layers jax_md_mod.model.neural_networks jax_md_mod.model.prior jax_md_mod.model.sparse_graph molecular_property_predictor() (in module chemtrain.quantity.property_prediction) MonotonicInterpolate (class in jax_md_mod.custom_interpolate) move_to_device() (DataParallelTrainer method) (Difftre method) (DifftreParallel method) (EarlyStopping method) (EnsembleOfModels method) (ForceMatching method) (InterleaveTrainers method) (MLETrainerTemplate method) (PropertyPrediction method) (RelativeEntropy method) (SGMCForceMatching method) mse_loss() (in module chemtrain.learn.max_likelihood) N n_statepoints (DifftreParallel attribute) nbrs (SimulatorState attribute) NeighborListStatistics (class in chemtrain.deploy.graphs) O OrthogonalVarianceScalingInit (class in jax_md_mod.model.layers) OutputBlock (class in jax_md_mod.model.layers) overflow (TrajectoryState attribute) P pad_per_atom_quantities() (in module jax_md_mod.model.sparse_graph) pair_interaction_nn() (in module jax_md_mod.model.neural_networks) PairwiseNN (class in jax_md_mod.model.neural_networks) params (DataParallelTrainer attribute) (Difftre attribute) (DifftreParallel attribute) (EnsembleOfModels attribute) (ForceMatching attribute) (InterleaveTrainers attribute) (MLETrainerTemplate attribute) (PropertyPrediction attribute) (RelativeEntropy attribute) (SGMCForceMatching attribute) params_dict() (EmbeddingBlock method) (InteractionBlock method) (OutputBlock method) (RadialBesselLayer method) (ResidualLayer method) (SmoothingEnvelope method) (SphericalBesselLayer method) partial_charge_prediction() (in module chemtrain.quantity.property_prediction) per_species_box_errors() (in module chemtrain.learn.property_prediction) per_species_results() (in module chemtrain.learn.property_prediction) periodic_dihedral() (in module jax_md_mod.custom_energy) pmap_update_fn() (in module chemtrain.learn.max_likelihood) position (SimpleState attribute) (State attribute) potential_energy_prediction() (in module chemtrain.quantity.property_prediction) predict() (DataParallelTrainer method) (Difftre method) (DifftreParallel method) (ForceMatching method) (PropertyPrediction method) Pressure (class in chemtrain.quantity.constants) pressure (Pressure property) print_training_tasks() (DataParallelTrainer method) (Difftre method) (DifftreParallel method) (ForceMatching method) (MLETrainerTemplate method) (PropertyPrediction method) (RelativeEntropy method) process_printouts() (in module chemtrain.ensemble.sampling) PropagateFn (class in chemtrain.ensemble.reweighting) PropertyPrediction (class in chemtrain.trainers) PropertyPredictor (class in chemtrain.quantity.property_prediction) prune_neighbor_list() (in module chemtrain.deploy.graphs) prune_neighbor_list_dense() (in module chemtrain.deploy.graphs) prune_topology() (Topology method) Q quantity_map() (in module chemtrain.ensemble.evaluation) quantity_multimap() (in module chemtrain.ensemble.evaluation) quantity_traj() (in module chemtrain.ensemble.sampling) QuantityComputeFunction (class in chemtrain.typing) R RadialBesselLayer (class in jax_md_mod.model.layers) RBFFrequencyInitializer (class in jax_md_mod.model.layers) RDFParams() (in module jax_md_mod.custom_quantity) real_sph_harm() (in module jax_md_mod.model.dimenet_basis_util) reference_nbrs (TrajectoryState attribute) RelativeEntropy (class in chemtrain.trainers) replace() (SimulatorState method) (TimingClass method) (TrajectoryState method) reset_convergence_losses() (DataParallelTrainer method) (EarlyStopping method) (ForceMatching method) (PropertyPrediction method) ResidualLayer (class in jax_md_mod.model.layers) restore() (DataParallelTrainer method) (Difftre method) (DifftreParallel method) (EnsembleOfModels method) (ForceMatching method) (InterleaveTrainers method) (MLETrainerTemplate method) (PropertyPrediction method) (RelativeEntropy method) (SGMCForceMatching method) reweight_trajectory() (in module chemtrain.ensemble.reweighting) run_to_next_printout_neighbors() (in module chemtrain.ensemble.sampling) S safe_angle_mask() (in module jax_md_mod.model.sparse_graph) save() (Exporter method) save_energy_params() (DataParallelTrainer method) (Difftre method) (DifftreParallel method) (EnsembleOfModels method) (ForceMatching method) (InterleaveTrainers method) (MLETrainerTemplate method) (PropertyPrediction method) (RelativeEntropy method) (SGMCForceMatching method) save_gro() (in module jax_md_mod.io) save_trainer() (DataParallelTrainer method) (Difftre method) (DifftreParallel method) (EnsembleOfModels method) (ForceMatching method) (InterleaveTrainers method) (MLETrainerTemplate method) (PropertyPrediction method) (RelativeEntropy method) (SGMCForceMatching method) save_traj() (in module jax_md_mod.io) scale_dataset_fractional() (in module chemtrain.data.preprocessing) self_diffusion_green_kubo() (in module jax_md_mod.custom_quantity) set_batches_per_epoch() (DataParallelTrainer method) (ForceMatching method) (PropertyPrediction method) set_data() (ForceField method) set_dataset() (DataParallelTrainer method) (ForceMatching method) (PropertyPrediction method) set_datasets() (DataParallelTrainer method) (ForceMatching method) (PropertyPrediction method) set_loader() (DataParallelTrainer method) (ForceMatching method) (PropertyPrediction method) set_properties() (SimpleDenseNeighborList static method) (SimpleSparseNeighborList static method) SGMCForceMatching (class in chemtrain.trainers) shielded_interaction() (in module jax_md_mod.custom_electrostatics) shielded_interaction_neighbor_list() (in module jax_md_mod.custom_electrostatics) shielded_self() (in module jax_md_mod.custom_electrostatics) shmap_loss_fn() (in module chemtrain.learn.max_likelihood) shmap_update_fn() (in module chemtrain.learn.max_likelihood) sim_state (SimulatorState attribute) (TrajectoryState attribute) SimpleDenseNeighborList (class in chemtrain.deploy.graphs) SimpleSparseNeighborList (class in chemtrain.deploy.graphs) SimpleState (class in chemtrain.ensemble.evaluation) SimulatorState (class in chemtrain.ensemble.sampling) SinglePropertyPredictor (class in chemtrain.quantity.property_prediction) SingleTarget (class in chemtrain.typing) SmoothingEnvelope (class in jax_md_mod.model.layers) snapshot_quantity() (in module chemtrain.quantity.property_prediction) sparse_graph_from_neighborlist() (in module jax_md_mod.model.sparse_graph) SparseDirectionalGraph (class in jax_md_mod.model.sparse_graph) sph_harm_prefactor() (in module jax_md_mod.model.dimenet_basis_util) spherical_bessel_formulas() (in module jax_md_mod.model.dimenet_basis_util) SphericalBesselLayer (class in jax_md_mod.model.layers) split_target_dict() (in module chemtrain.quantity.targets) State (class in chemtrain.ensemble.evaluation) state_dict() (EmbeddingBlock method) (InteractionBlock method) (OutputBlock method) (RadialBesselLayer method) (ResidualLayer method) (SmoothingEnvelope method) (SphericalBesselLayer method) StatePoint (class in chemtrain.ensemble.templates) static_kwargs (TrajectoryState attribute) stiffness_tensor_components_cubic_crystal() (in module chemtrain.quantity.observables) stiffness_tensor_components_hexagonal_crystal() (in module chemtrain.quantity.observables) stillinger_weber_energy() (in module jax_md_mod.custom_energy) stillinger_weber_neighborlist() (in module jax_md_mod.custom_energy) stillinger_weber_pair() (in module jax_md_mod.custom_energy) structure_factor() (in module jax_md_mod.custom_electrostatics) T t_equilib_start (TimingClass attribute) t_production_end (TimingClass attribute) t_production_start (TimingClass attribute) tabulated() (in module jax_md_mod.custom_energy) tabulated_neighbor_list() (in module jax_md_mod.custom_energy) tabulated_pair() (in module jax_md_mod.custom_energy) TargetBuilder (class in chemtrain.quantity.targets) TCFParams() (in module jax_md_mod.custom_quantity) Temperature (class in chemtrain.quantity.constants) temperature (Temperature property) temperature() (in module jax_md_mod.custom_quantity) test_rmse_params_fm() (in module chemtrain.learn.probabilistic) thermostat_kbt (TrajectoryState attribute) time_step (TimingClass attribute) timesteps_per_printout (TimingClass attribute) TimingClass (class in chemtrain.ensemble.sampling) to_dict() (SparseDirectionalGraph method) to_networkx() (in module jax_md_mod.custom_partition) to_tuple() (SimulatorState method) (TimingClass method) (TrajectoryState method) Topology (class in jax_md_mod.model.prior) total_energy_wrapper() (in module jax_md_mod.custom_quantity) train() (DataParallelTrainer method) (Difftre method) (DifftreParallel method) (EnsembleOfModels method) (ForceMatching method) (InterleaveTrainers method) (MLETrainerTemplate method) (PropertyPrediction method) (RelativeEntropy method) (SGMCForceMatching method) train_val_test_split() (in module chemtrain.data.preprocessing) trajectory (TrajectoryState attribute) trajectory_generator_init() (in module chemtrain.ensemble.sampling) TrajectoryState (class in chemtrain.ensemble.sampling) TrajFn (class in chemtrain.typing) truncated_lennard_jones() (in module jax_md_mod.custom_energy) truncated_lennard_jones_neighborlist() (in module jax_md_mod.custom_energy) U unconstrain_ff_params() (in module jax_md_mod.model.prior) uniform_prior() (in module chemtrain.learn.probabilistic) update_with_samples() (DataParallelTrainer method) (ForceMatching method) (PropertyPrediction method) uq_trajectories() (in module chemtrain.learn.probabilistic) V validation_mae_params_fm() (in module chemtrain.learn.probabilistic) values() (SimulatorState method) (SparseDirectionalGraph method) (TimingClass method) (TrajectoryState method) virial_potential_part() (in module jax_md_mod.custom_quantity) volume() (in module jax_md_mod.custom_quantity) W wandb_log_difftre() (in module chemtrain.trainers.extensions) write_ff() (ForceField method)